In this project, I explore differential gene expression and pathway enrichment in two prostate cancer cell lines—LNCaP and PC3—under different oxygen conditions: hypoxia (low oxygen) and normoxia (normal oxygen). Hypoxia is a common feature of tumor environments and...
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Bioinformatics Analysis
RNA-seq Analysis Pipeline
A Step-by-Step Guide to RNA-seq Data Processing: From Data Download to Raw Counts In this article, I will walk you through the process of analyzing RNA-seq data, starting from downloading the raw data to obtaining gene expression counts. This is an essential workflow...
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Evolution of DNA Sequence Alignment: Key Milestones
From the foundational Needleman-Wunsch Algorithm in 1970 to AI-powered techniques in 2024, the field of DNA sequence alignment has seen transformative advancements. These innovations have revolutionized genomics, making sequence analysis faster, more accurate, and...
Trailmaker: Single Cell Data Analysis | Parse Biosciences
Exciting news from the forefront of single-cell RNA sequencing! Just attended an in-depth session on Trail Maker, an innovative platform transforming how we analyze and understand cellular data. Key Highlights: Complete Single-cell RNA Sequencing Solution: Trail Maker...
Bioinformatics essential file formats and functions
In the rapidly evolving field of bioinformatics, understanding the different file formats is crucial for data analysis and research. Here's a quick guide to some of the most commonly used bioinformatics files
A dynamic dashboard visualizing Gene Expression Data
Exciting News for Data Enthusiasts and Bioinformatics Professionals! I am thrilled to share my latest project - a dynamic dashboard visualizing Gene Expression Data, created using R Shiny. This tool is designed to help researchers and data scientists gain insights...
A Practical Guide to Interpreting Proteomics Data Visualization
Data visualization plays a crucial role in analysis by bridging the gap between data and results. Mass spectrometry facilitates an in-depth examination of complex proteomes. Given the widespread availability of mass spectrometry, we are now faced with a vast amount of...
Luddy Journal Club
Unlocking the World of Knowledge with Luddy Journal Club! Hey, knowledge enthusiasts! I'm Swaraj, your go-to person as the Journal Committee Chair of the Biomedical Informatics Club (aka the proud President of the Luddy Journal Club). Today, let's chat about the...
Advance Python
For individuals with a foundational grasp of Python looking to push the boundaries of coding, this video offers valuable insights. It provides hands-on experience to delve deeper and encourages thinking in a slightly different way. I recommend this video; feel free to fast forward and focus on learning the concepts. Happy coding!
Genetic and Health Record Dataset: Insights and Translations
This summary report is based on the topic Biological and translational insights from large scale genetic and electronic health record dataset by professor Dajiang Liu.
Brain Electric Connectomics
Brain Electric Connectomics: The following report presents a comprehensive analysis of dissecting brain mechanisms. Topic of seminar report is Electric Connectomics: Dissecting Brain Mechanisms Underlying Behavioral Brain States presented by Dr Rainbo Hultman