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Understanding Genome Assembly Using De Bruijn Graphs: From Concepts to Code
Genome assembly is a key concept in bioinformatics, and it involves reconstructing a long DNA sequence from short, overlapping fragments known as reads. The purpose of this article is to explain how we can use De Bruijn graphs and Eulerian paths to solve genome...
RNA-seq Analysis Pipelin
A Step-by-Step Guide to RNA-seq Data Processing: From Data Download to Raw Counts In this article, I will walk you through the process of analyzing RNA-seq data, starting from downloading the raw data to obtaining gene expression counts. This is an essential workflow...
Different types of Bioinformatics data
Bioinformatics data encompasses various types, each crucial for advancing our understanding of biological systems and enhancing medical research. Bioactivity data reveals how compounds interact with biological systems, essential for drug discovery and safety...
Evolution of DNA Sequence Alignment: Key Milestones
From the foundational Needleman-Wunsch Algorithm in 1970 to AI-powered techniques in 2024, the field of DNA sequence alignment has seen transformative advancements. These innovations have revolutionized genomics, making sequence analysis faster, more accurate, and...
Trailmaker: Single Cell Data Analysis | Parse Biosciences
Exciting news from the forefront of single-cell RNA sequencing! Just attended an in-depth session on Trail Maker, an innovative platform transforming how we analyze and understand cellular data. Key Highlights: Complete Single-cell RNA Sequencing Solution: Trail Maker...
Bioinformatics essential file formats and functions
In the rapidly evolving field of bioinformatics, understanding the different file formats is crucial for data analysis and research. Here's a quick guide to some of the most commonly used bioinformatics files
A dynamic dashboard visualizing Gene Expression Data
Exciting News for Data Enthusiasts and Bioinformatics Professionals! I am thrilled to share my latest project - a dynamic dashboard visualizing Gene Expression Data, created using R Shiny. This tool is designed to help researchers and data scientists gain insights...
A Practical Guide to Interpreting Proteomics Data Visualization
Data visualization plays a crucial role in analysis by bridging the gap between data and results. Mass spectrometry facilitates an in-depth examination of complex proteomes. Given the widespread availability of mass spectrometry, we are now faced with a vast amount of...
Luddy Journal Club
Unlocking the World of Knowledge with Luddy Journal Club! Hey, knowledge enthusiasts! I'm Swaraj, your go-to person as the Journal Committee Chair of the Biomedical Informatics Club (aka the proud President of the Luddy Journal Club). Today, let's chat about the...
Genetic and Health Record Dataset: Insights and Translations
This summary report is based on the topic Biological and translational insights from large scale genetic and electronic health record dataset by professor Dajiang Liu.
Brain Electric Connectomics
Brain Electric Connectomics: The following report presents a comprehensive analysis of dissecting brain mechanisms. Topic of seminar report is Electric Connectomics: Dissecting Brain Mechanisms Underlying Behavioral Brain States presented by Dr Rainbo Hultman
T Cell Regulation in Graft vs Host Disease by RNA and Microproteins
T Cell Regulation in Graft vs Host Disease by RNA and Microproteins: Dr. Dan Peltier, MD/PhD, conducted the seminar, initiating it with a comprehensive elucidation of hematopoietic stem cell transplantation (HSCT) as a curative remedy for various hematologic malignancies.
Resources
Understanding Genome Assembly Using De Bruijn Graphs: From Concepts to Code
Genome assembly is a key concept in bioinformatics, and it involves reconstructing a long DNA sequence from short, overlapping fragments known as reads. The purpose of this article is to explain how we can use De Bruijn graphs and Eulerian paths to solve genome...
Advance Python
For individuals with a foundational grasp of Python looking to push the boundaries of coding, this video offers valuable insights. It provides hands-on experience to delve deeper and encourages thinking in a slightly different way. I recommend this video; feel free to fast forward and focus on learning the concepts. Happy coding!
Python for beginners
If you're a beginner looking to start from scratch or someone with coding experience aiming to refine your skills, this course is tailored for you. Amidst the multitude of videos on YouTube, I find this one to be more direct and to the point. Feel free to delve into...